Package: jaccard 0.1.0

jaccard: Testing similarity between binary datasets using Jaccard/Tanimoto coefficients

Calculate statistical significance of Jaccard/Tanimoto similarity coefficients.

Authors:Neo Christopher Chung <[email protected]>, Błażej Miasojedow <[email protected]>, Michał Startek <[email protected]>

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jaccard.pdf |jaccard.html✨
jaccard/json (API)

# Install 'jaccard' in R:

install.packages('jaccard', repos = c('https://ncchung.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ncchung/jaccard/issues

Uses libs:

c++– GNU Standard C++ Library v3

On CRAN:

binary-data hypothesis-testing jaccard similarity statistics tanimoto cpp

5.03 score 5 stars 85 scripts 259 downloads 5 mentions 10 exports 59 dependencies

Last updated 5 years agofrom:ad1d8fc43a. Checks:1 OK, 11 NOTE. Indexed: yes.

Target	Result	Latest binary
Doc / Vignettes	OK	Mar 05 2025
R-4.5-win-x86_64	NOTE	Mar 05 2025
R-4.5-mac-x86_64	NOTE	Mar 05 2025
R-4.5-mac-aarch64	NOTE	Mar 05 2025
R-4.5-linux-x86_64	NOTE	Mar 05 2025
R-4.4-win-x86_64	NOTE	Mar 05 2025
R-4.4-mac-x86_64	NOTE	Mar 05 2025
R-4.4-mac-aarch64	NOTE	Mar 05 2025
R-4.4-linux-x86_64	NOTE	Mar 05 2025
R-4.3-win-x86_64	NOTE	Mar 05 2025
R-4.3-mac-x86_64	NOTE	Mar 05 2025
R-4.3-mac-aarch64	NOTE	Mar 05 2025

Exports:jaccard jaccard.ev jaccard.rahman jaccard.test jaccard.test.asymptotic jaccard.test.bootstrap jaccard.test.exact jaccard.test.mca jaccard.test.pairwise runJaccardApp

Dependencies:base64enc bslib cachem cli colorspace commonmark crayon digest dplyr fansi farver fastmap fontawesome fs generics ggplot2 glue gtable htmltools httpuv isoband jquerylib jsonlite labeling later lattice lifecycle magrittr MASS Matrix memoise mgcv mime munsell nlme pillar pkgconfig plyr promises qvalue R6 rappdirs RColorBrewer Rcpp reshape2 rlang sass scales shiny sourcetools stringi stringr tibble tidyselect utf8 vctrs viridisLite withr xtable

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Compute a Jaccard/Tanimoto similarity coefficient	jaccard
Compute an expected Jaccard/Tanimoto similarity coefficient under independence	jaccard.ev
Compute p-value using the EC-BLAST method	jaccard.rahman
Test for Jaccard/Tanimoto similarity coefficients	jaccard.test
Compute p-value using an asymptotic approximation	jaccard.test.asymptotic
Compute p-value using the bootstrap procedure	jaccard.test.bootstrap
Compute p-value using the exact solution	jaccard.test.exact
Compute p-value using the Measure Concentration Algorithm	jaccard.test.mca
Pair-wise tests for Jaccard/Tanimoto similarity coefficients	jaccard.test.pairwise
Launch an interactive Shiny app on a local network	runJaccardApp

Usage by other packages (reverse dependencies)